Publications

Review/ Opinion Papers

Coping With Cold: Sorghum Cold Stress From Germination to Maturity, Crop Science

Picturing the Future of Food, The Plant Phenome Journal

NAPPN: Who We Are, Where We Are Going, and Why You Should Join Us!, The Plant Phenome Journal

Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future, Plant Direct

High-Througput Phenotyping, American Journal of Botany

Lights, Camera, Action, High-Throughput Phenotyping is Ready for a Close-Up, Current Opinions in Plant Biology

Transcriptional Networks- Crops, Clocks, and Abiotic Stress, Current Opinions in Plant Biology

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology, Plant Physiology

Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences, Frontiers in Plant Sciences

Phenotyping

A protocol for Chenopodium quinoa Pollen germination, Plant Methods

Raspberry Pi–powered imaging for plant phenotyping, Applications in Plant Sciences

PlantCV v2: Image analysis software for high-throughput plant phenotyping, PeerJ

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria, Molecular Plant

Temperature Stress 

Natural variation in Brachypodium distachyon responses to combined abiotic stresses, Plant Journal

Heat Stress Changes Mineral Nutrient Concentrations in Chenopodium quinoa Seed, Plant Direct

Heating quinoa shoots results in yield loss by inhibiting fruit production and delaying maturity, Plant Journal

Circadian Clock-Associated 1 and Late Elongated Hypocotyl Regulate Expression of C-Repeat Binding Factor (CBF) Pathway in Arabidopsis, PNAS

Natural Variation in the C-Repeat Binding Factor Cold Response Pathway Correlates with Local Adaptation of Arabidopsis Ecotypes, The Plant Journal

Heat Suppresses Activation of an Auxin-Responsive Promoter in Cultured Guard Cell Protoplasts of Tree Tobacco, Plant Physiology

Collaborations

CRISPR/Cas9-mediated tetra-allelic mutation of the ‘Green Revolution’ SEMIDWARF-1 (SD-1) gene confers lodging resistance in tef (Eragrostis tef), Plant Biotechnology Journal. (Collaboration with Taylor Lab, provided method to quantify tef lodging in image data.)

Classifying cold‐stress responses of inbred maize seedlings using RGB imaging, Plant Direct (Collaboration with the Hirsch and Springer Labs, contributed image analysis)

Components of Water Use Efficiency Have Unique Genetic Signatures in the Model C4 Grass Setaria, Plant Physiology (Collaboration with the Baxter Lab, contributed image analysis)

Cross‐species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots, Plant Direct (Collaboration with Nusinow Lab, contributed circadian RNA-seq dataset, analysis, and an interactive Shiny App)

Provitamin A biofortification of cassava enhances shelf life but reduces dry matter content of storage roots due to altered carbon partitioning into starch, Plant Biotechnology Journal. (Collaboration with the Taylor Lab, provided RNA-seq analysis)

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