Current Projects
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DSFAS-CIN: Alliance of Plant Phenotyping Software (APPS) Developers: Integration and Interoperability of Open-Source Tools to Support Plant Phenotyping for Agriculture
USDA DSFAS-CIN PI: Dr. Malia Gehan Co-PIs: Dr. Noah Fahlgren, Dr. Susan Meerdink, Dr. Alina Zare |
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B5: Bigger, Better, Brassicaceae, Biofuels, and Bioproducts
Department of Energy PI: Dr. Ed Cahoon Role: Co-PI |
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An Integrated Multi-Omics Approach to Understand Drought, Temperature, and Nutrient Stress Responses
USDA-NIFA PI: Dr. Cory Hirsch Role: Co-PI |
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Non-Profit and HBCU Collaboration to Establish a Plant Phenotyping Data Science Course-Based Undergraduate Research Experience
NSF-IUSE PI: Dr. Kristine Callis-Duehl Role: Co-PI |
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BII: New Roots for Restoration: integrating plant traits, communities, and the soil ecosphere to advance restoration of natural and agricultural systems
NSF-BII PI: Dr. Allison Miller Role: Key Personnel |
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NSF-POSE: Phase I: An Open-Source Ecosystem for Plant Phenotyping Tools Based on Plant Computer Vision (PlantCV)
NSF - Pose PI:Noah Fahlgren Role: Co- PI |
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Pivots: Pivoting to Plants (P2P): Experiential Learning Program Applying Imaging and Data Science Tools from Cells to Fields
NSF- ExLent PI: Dr. Noah Fahlgren Role: Co- PI |
Past Projects
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URoL: Epigenetics 2: Collaborative Research: Revealing how epigenetic inheritance governs the environmental challenge response with transformative 3D genomics and machine learning
NSF-Understanding Rules of Life Epigenetics PI: Dr. Keith Slotkin Role: Co-PI 
Vegetable oil production in leaves of next generation crops within dynamic environments
USDA-NIFA PI: Dr. Malia Gehan Co-PIs: Dr. Doug Allen, Dr. Philip Bates, Dr. Helmut Kirschoff |
SENTINEL: SENsing Threats in Natural Environments Using Ligand-receptor Modules
DARPA-APT PI: Dr. Dmitri Nusinow Role: Co-PI 
AFRI-Increased Night Temperature and Salt Stress Effect in Quinoa
USDA-NIFA Postdoctoral Fellowship PI: Dr. Lucia Acosta-Gamboa Role: Mentor |
Optimizing tradeoffs implicit during bioenergy crop improvement: Understanding the effect of altered cell wall and sugar content on Sorghum-associated pathogenic bacteria
Department of Energy PI: Dr. Becky Bart Role: Co-PI |
Correlating Maize Metabolic and Phenotypic Responses to Heat Stress
NSF-PGRP Postdoctoral Fellow PI: Dr. Katie Murphy Role: Co-Sponsoring Scientist with Dr. Doug Allen |
FACT: The PlantCV Platform: Open-source Tools for Plant Phenomics Across Scales
USDA-FACT PI: Dr. Noah Fahlgren Role: Co-PI |
Enhancing cold tolerance in Sorghum bicolor by exploring crosstalk between cold acclimation and abscisic acid signaling
USDA-NIFA Postdoctoral Fellowship PI: Dr. Anna Casto Role: Mentor |
Improving Environmental Stress Tolerance in the Grass Model, Brachypodium distachyon
NSF Plant Genome Initiative Fellowship to PI: Dr. Malia Gehan Sponsoring Scientist: Dr. Todd Mockler |
Identification of genes and phenotypes affecting yield and nutritional quality of quinoa under heat
USDA-NIFA Postdoctoral Fellowship PI: Dr. Jose Tovar Role: Mentor |